﻿<?xml version="1.0" encoding="utf-8" ?>
<AutomationTest>
  <SamFileParser>
    <FilePaths>
      <FilePath>TestUtils\SAMBAMTestData\AlignmentWithRef.sam</FilePath>
    </FilePaths>
    <ParserName>SAM</ParserName>
    <FileTypes>.sam</FileTypes>
    <Description>A SAMParser reads from a source of text that is formatted according to the SAM file specification, and converts the data to in-memory SequenceAlignmentMap objects.</Description>
  </SamFileParser>
  <SamFileFormatter>
    <FilePaths>
      <FilePath>TestUtils\SAMBAMTestData\AlignmentWithRef.sam</FilePath>
    </FilePaths>
    <ParserName>SAM</ParserName>
    <FileTypes>.sam</FileTypes>
    <Description>Writes a SequenceAlignmentMap to a particular location, usually a file. The output is formattedaccording to the SAM file format.</Description>
  </SamFileFormatter>
  <BamFileParser>
    <FilePaths>
      <FilePath>TestUtils\SAMBAMTestData\SeqAlignment.bam</FilePath>
    </FilePaths>
    <ParserName>BAM</ParserName>
    <FileTypes>.bam</FileTypes>
    <Description>A BAMParser reads from a source of binary data that is formatted according to the BAM file specification, and converts the data to in-memory SequenceAlignmentMap object.</Description>
  </BamFileParser>
  <BamFileFormatter>
    <FilePaths>
      <FilePath>TestUtils\SAMBAMTestData\SeqAlignment.bam</FilePath>
    </FilePaths>
    <ParserName>BAM</ParserName>
    <FileTypes>.bam</FileTypes>
    <Description>Writes a SequenceAlignmentMap to a particular location, usually a file. The output is formatted according to the BAM file format.</Description>
  </BamFileFormatter>
</AutomationTest>